Our codes are mostly written in MATLAB or Python
Software developed by the lab are uploaded below as GitHub links with reference to the articles where they were used

 

1. Particle tracker (MATLAB): 
This script tracks the centroid of a moving bacterial cell. At the end of the code it plots the centroids from consecutive frames. Abhishek935/Particle-Tracker-MATLAB

 

2. Bacterial growth tracker (MATLAB): 

This script measures the area of E. coli cells growing on agar surface from a video file. At the end of the code it plots the change in area as a function of time. Abhishek935/Growth-tracker-MATLAB

 
3. https://github.com/Abhishek935/Molecular-Rack-and-Pinion
Reference: Shrivastava and Berg, BioRxiv 2019 https://doi.org/10.1101/267583 

 

4. https://github.com/Abhishek935/Screw-like-bacterial-motion-Biophysical-J.-2016
Reference: Shrivastava, Roland, Berg. Biophysical J. 2016 https://www.sciencedirect.com

 

5. https://github.com/Abhishek935/Rotary-Motor-Current-Biol.-2015 
Reference: Shrivastava, Lele, Berg Current Biology 2015 https://www.cell.com/current-biology/pdf